PoSeCo | Poliovirus Sequencing Consortium
piranha | Poliovirus Investigation Resource Automating Nanopore Haplotype Analysis

 

Detailed information on Sample06 2023-10-30


Table 1 | Summary of sample content

Sample Barcode Reference Group
Sample02 barcode02 Sabin2-related

Sequences (VP1)

>Sample02|Sabin2-related|CNS1|EDI002|2022-01-02 barcode=barcode02 reference=Poliovirus2-Sabin_AY184220 ddns_group=Sabin2-related runname=MIN001 variant_count=10 variants=56:TC;84:TC;90:AG;111:CT;258:CT;428:TC;519:TC;624:TC;656:GA;741:TC
GGAATTGGTGACATGATTGAGGGGGCCGTTGAAGGGATTACTAAAAATGCATTGGCTCCCCCGACTTCCACCAATAGCCTGCCCGACACGAAGCCGAGCGGTCCAGCCCATTCCAAGGAGATACCTGCATTGACAGCCGTGGAGACAGGGGCTACCAATCCGTTGGTGCCTTCGGACACCGTGCAAACGCGCCATGTCATCCAGAGACGAACGCGATCAGAGTCCACGGTTGAGTCATTCTTTGCAAGAGGGGCTTGTGTGGCTATCATTGAGGTGGACAATGATGCACCGACAAAGCGCGCCAGCAGATTGTTTTCGGTTTGGAAAATAACTTACAAAGATACTGTTCAACTGAGACGCAAACTGGAATTTTTCACATATTCGAGATTTGACATGGAGTTCACTTTTGTGGTCACCTCAAACTACACTGATGCAAATAACGGACATGCATTGAACCAAGTTTATCAGATAATGTATATACCACCCGGAGCACCTATCCCTGGTAAATGGAATGACTACACGTGGCAGACGTCCTCTAACCCGTCGGTGTTTTACACCTATGGGGCGCCCCCAGCAAGAATATCAGTGCCCTACGTGGGAATTGCTAATGCGTATTCCCACTTCTATGATGGGTTTGCAAAAGTACCACTAGCGGATCAAGCCTCAACTGAAGGCGATTCGTTGTACGGTGCTGCCTCACTGAATGATTTTGGATCACTGGCTGTTCGCGTGGTAAATGACCACAACCCCACGCGGCTCACCTCCAAGATCAGAGTGTACATGAAGCCAAAGCATGTCAGAGTCTGGTGCCCACGACCTCCACGAGCAGTCCCATACTTCGGACCAGGTGTTGATTATAAAGATGGGCTCACCCCACTACCAGAAAAGGGATTAACGACTTAT


Variant report: Sabin2-Related

Table 2 | Sabin2-related

Information
Reference group Sabin2-related
Number of mutations 10
Mutations 56:TC
84:TC
90:AG
111:CT
258:CT
428:TC
519:TC
624:TC
656:GA
741:TC


Figure 1 | Variation (errors + mutations) across Sabin2-Related reference in Sample06

2023-10-30T14:09:47.031766 image/svg+xml Matplotlib v3.8.0, https://matplotlib.org/

Figure 2 | snipit plot for queries in Sabin2-Related

Figure 3 | Co-occurrence matrix of Reference and Variant alleles called against Sabin2-Related reference in Sample06. This is the percentage of bases that cover those sites in the mapping file that are of a high quality (>13) and that are either the reference allele or the allele of the variant called at that site.