PoSeCo | Poliovirus Sequencing Consortium
Detailed information on Sample06 2023-10-30
Table 1 | Summary of sample content
| Sample | Barcode | Reference Group |
|---|---|---|
| Sample01 | barcode01 | Sabin3-related |
| Sample01 | barcode01 | Sabin2-related |
Sequences (VP1)
>Sample01|Sabin3-related|CNS1|EDI001|2022-01-01 barcode=barcode01 reference=Poliovirus3-Sabin_AY184221 ddns_group=Sabin3-related runname=MIN001 variant_count=8 variants=17:CT;161:CT;427:GA;497:AC;507:CT;772:AG;822:CT;870:CA
GGTATTGAAGATTTGATTTCTGAAGTTGCACAGGGCGCCCTAACTTTGTCACTCCCGAAGCAACAGGATAGCTTACCTGATACTAAGGCCAGTGGCCCGGCGCATTCCAAGGAGGTACCTGCACTCACTGCAGTCGAGACTGGAGCCACCAATCCTCTGGTACCATCCGACACAGTTCAAACGCGCCACGTAGTCCAACGACGCAGCAGGTCAGAGTCCACAATAGAATCATTCTTCGCACGCGGGGCGTGCGTCGCTATTATTGAGGTGGACAATGAACAACCAACCACCCGGGCACAGAAACTATTTGCCATGTGGCGCATTACATACAAAGATACAGTGCAGTTGCGCCGTAAGTTGGAGTTTTTCACATACTCTCGTTTTGACATGGAATTCACCTTCGTGGTAACCGCCAACTTCACCAACACTAATAATGGGCATGCACTCAACCAGGTGTACCAGATAATGTACATNCCCCCAGGGGCACCCACACCAACGTCATGGGATGACTACACTTGGCAAACATCTTCCAACCCGTCCATATTTTACACCTATGGGGCTGCCCCGGCGCGAATCTCAGTGCCATACGTGGGGTTAGCCAATGCTTACTCGCACTTTTACGACGGCTTCGCCAAGGTGCCATTGAAGACAGATGCCAATGACCAGATTGGTGATTCCTTGTACAGCGCCATGACAGTTGATGACTTTGGTGTATTGGCAGTTCGTGTTGTCAATGATCACAACCCCACTAAAGTAACCTCCAAAGTCCGCGTTTACATGAAACCCAAACACGTACGTGTCTGGTGCCCTAGACCGCCGCGTGCGGTACCTTATTATGGACCAGGGGTGGACTATAGGAACAACTTGGAACCCTTATCTGAGAAAGGTTTGACCACATAT
>Sample01|Sabin2-related|CNS1|EDI001|2022-01-01 barcode=barcode01 reference=Poliovirus2-Sabin_AY184220 ddns_group=Sabin2-related runname=MIN001 variant_count=1 variants=428:TC
GGAATTGGTGACATGATTGAGGGGGCCGTTGAAGGGATTACTAAAAATGCATTGGTTCCCCCGACTTCCACCAATAGCCTGCCTGACACAAAGCCGAGCGGTCCAGCCCACTCCAAGGAGATACCTGCATTGACAGCCGTGGAGACAGGGGCTACCAATCCGTTGGTGCCTTCGGACACCGTGCAAACGCGCCATGTCATCCAGAGACGAACGCGATCAGAGTCCACGGTTGAGTCATTCTTTGCAAGAGGGGCTTGCGTGGCTATCATTGAGGTGGACAATGATGCACCGACAAAGCGCGCCAGCAGATTGTTTTCGGTTTGGAAAATAACTTACAAAGATACTGTTCAACTGAGACGCAAACTGGAATTTTTCACATATTCGAGATTTGACATGGAGTTCACTTTTGTGGTCACCTCAAACTACACTGATGCAAATAACGGACATGCATTGAACCAAGTTTATCAGATAATGTATATACCACCCGGAGCACCTATCCCTGGTAAATGGAATGACTATACGTGGCAGACGTCCTCTAACCCGTCGGTGTTTTACACCTATGGGGCGCCCCCAGCAAGAATATCAGTGCCCTACGTGGGAATTGCTAATGCGTATTCCCACTTTTATGATGGGTTTGCAAAAGTACCACTAGCGGGTCAAGCCTCAACTGAAGGCGATTCGTTGTACGGTGCTGCCTCACTGAATGATTTTGGATCACTGGCTGTTCGCGTGGTAAATGATCACAACCCCACGCGGCTCACCTCCAAGATCAGAGTGTACATGAAGCCAAAGCATGTCAGAGTCTGGTGCCCACGACCTCCACGAGCAGTCCCATACTTCGGACCAGGTGTTGATTATAAAGATGGGCTCACCCCACTACCAGAAAAGGGATTAACGACTTAT
Variant report: Sabin3-Related
Table 2 | Sabin3-related
| Information | |
|---|---|
| Reference group | Sabin3-related |
| Number of mutations | 8 |
| Mutations | 17:CT 161:CT 427:GA 497:AC 507:CT 772:AG 822:CT 870:CA |
Figure 1 | Variation (errors + mutations) across Sabin3-Related reference in Sample06
Figure 2 | snipit plot for queries in Sabin3-Related
Figure 3 | Co-occurrence matrix of Reference and Variant alleles called against Sabin3-Related reference in Sample06. This is the percentage of bases that cover those sites in the mapping file that are of a high quality (>13) and that are either the reference allele or the allele of the variant called at that site.
Variant report: Sabin2-Related
Table 3 | Sabin2-related
| Information | |
|---|---|
| Reference group | Sabin2-related |
| Number of mutations | 1 |
| Mutations | 428:TC |